RMAExpress
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The goal of this website is to show some of the interesting artifacts observed in the chip pseudo-images produced by the PLM procedures in the BioConductor. AffyPLM package or via RMAExpress. You can read more about how to use affyPLM from BioConductor. Gentleman R, Carey V, Huber W, Irizarry R, and Dudoit S.
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Written by Ben Bolstad. RMAExpress is a standalone GUI program for Windows, OS X and Linux to compute gene expression summary values for Affymetrix Genechip data using the Robust Multichip Average expression summary and to carry out quality assessment using probe-level metrics. It does not require R. Nor is it dependent on any component of the BioConductor. Project. If focuses on processing 3 IVT expression arrays, exon and WT gene arrays. Accepted for publication in Biostatistics. Abstract. Should be.CONTENT
This website rmaexpress.bmbolstad.com has the following in the web page, "RMAExpress is a standalone GUI program for Windows, OS X and Linux to compute gene expression summary values for Affymetrix Genechip data using the Robust Multichip Average expression summary and to carry out quality assessment using probe-level metrics." Our analyzers analyzed that the website also stated " It does not require R." The Website also stated " Nor is it dependent on any component of the BioConductor. If focuses on processing 3 IVT expression arrays, exon and WT gene arrays. Accepted for publication in Biostatistics."OTHER WEBSITES
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